Post any defects you find in the released or beta versions of the ImageMagick software here. Include the ImageMagick version, OS, and any command-line required to reproduce the problem. Got a patch for a bug? Post it here.
Here is the screen shot. The terminal window is actually behind the google chrome browser window. Oddly, the terminal's border is missing. (2nd screenshot: what it looks like with ubuntu's default screen capture of roughly the same area)
Ubuntu's default "Take Screenshot" program has the correct output:
Nope, sorry. When I use -screen it captures the whole desktop instead of the selected area, but even then, the terminal window still shows though the browser.